Scaffold Ga0206683_10129776

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10129776
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_101297762	F015741	GGAG	MKLKRKLGLVLVCLMFSTGCSGFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLESNPPEIVSKDLAQVSKNNDLYKEVCKEHKSMADKMKAKATRVLDNTLMATEE
Ga0206683_101297763	F002078	AGGAG	MDIAAMFEGQGWFAIAGQIVLVFTAITGSLPDKFVQKIPVLGTIWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKIRTRAGMPDVLDGM
Ga0206683_101297764	F022754	N/A	MNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYNATPVSCKFQPRHKREMVFRSPNDRCYSVYDLGSPRFVRHPDHWYKVKLPENLGE