Scaffold Ga0206683_10088267

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10088267
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100882673	F040056	GGAGG	VQTQLDFRLGTLVRWNAGNTGEPGDIDELGIVIQMPGEHWSGNYHISWCTSNTVSHHSPDMVEESLYQQQMEIVG
Ga0206683_100882674	F029745	GAGG	VASKAPRVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGSSWDVYTRRDTLEVLSRANPT
Ga0206683_100882675	F077179	GGAGG	VKQDDYKPGDLILFFHGCPTDEAGPEEIGWIVHRDYDDPSEPAVMVAFPEPNKNGLLHYFDVELREWEKAGTIEVKRG
Ga0206683_100882676	F073529	AGGTGG	MKIGDLVILRSGRYNFLPQAGGRAKWVWAEVLGVITDDRGFVDGTAEYKVYTADNKHTWSHIEDLKIVE