Scaffold Ga0206683_10075763

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10075763
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F032335	Metagenome	180	Y
F093714	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100757631	F032335	N/A	MKVSELKEGMLLRFKEPRVYKYLRDSGDDFWLDCGALDPRMTLKWVHTGQPLMIYLGQEEMEAPSQYGGYMNIRKVSVEGREAWMWPDAWRYVEAV
Ga0206683_100757635	F029400	AGGTGG	MKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEHETYLMITVLFARDDIPYSSNIKDFEVVNENW
Ga0206683_100757637	F093714	GGAGG	MKIGDLVMKPLGSFCRDDAGLGLVVEILEKPGLFPTRSGYKVQWSNDYGTYWASEDKLERVNENR