Scaffold Ga0206683_10054274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206683_10054274

Scaffold Ga0206683_10054274

Overview

Basic Information
Taxon OID	3300021087 Open in IMG/M
Scaffold ID	Ga0206683_10054274 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2261
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.6907	Long. (^o)	-122.3448	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045143	Metagenome	153	Y
F103385	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100542742	F103385	N/A	MIPTKRKMKRKELIDRVQALEYVLSNVINNARNLELVIDYYVEMNGDVKKFEKFLDKKQEDANSTEPESE
Ga0206683_100542743	F045143	AGG	MEIQIDKLTLGQTIEALKKTSEGLTQLEVEFPDNYIIRKIMTMKQLVDHLNAKELVIDESDYYKN

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