Scaffold Ga0206683_10037250

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10037250
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2808
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y
F066688	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100372501	F066688	N/A	YFKNNARSQWRMMQAFMGSHYYWSADKGKSNTPGELLEEIFNDLPESEMDRTYTLRRFISHKNCPLNLALKIGTIKTPESAQRYYMDDFEKLRNDAMLKVAEITKRESAVSR
Ga0206683_100372502	F030754	GGAG	MARTPKGNNAFALANGNRLAADSTHGVTCNYAGGCRVFDANINKKHENHWLCEHHGGAKDSRANARDEEYANGIPGAERRLRFARVRAKQRKAAVFTGHIPSFLDKPEPKPKPKPKKVAPVVQAKSQKQLKREAALAELGMTEAQFQAVFGV
Ga0206683_100372503	F003330	GGAG	VRKQDAWGKPILKVGDVVQSLPLKDDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYITELELMSEV