NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206683_10037250

Scaffold Ga0206683_10037250


Overview

Basic Information
Taxon OID3300021087 Open in IMG/M
Scaffold IDGa0206683_10037250 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2808
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003330Metagenome / Metatranscriptome493Y
F030754Metagenome184Y
F066688Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0206683_100372501F066688N/AYFKNNARSQWRMMQAFMGSHYYWSADKGKSNTPGELLEEIFNDLPESEMDRTYTLRRFISHKNCPLNLALKIGTIKTPESAQRYYMDDFEKLRNDAMLKVAEITKRESAVSR
Ga0206683_100372502F030754GGAGMARTPKGNNAFALANGNRLAADSTHGVTCNYAGGCRVFDANINKKHENHWLCEHHGGAKDSRANARDEEYANGIPGAERRLRFARVRAKQRKAAVFTGHIPSFLDKPEPKPKPKPKKVAPVVQAKSQKQLKREAALAELGMTEAQFQAVFGV
Ga0206683_100372503F003330GGAGVRKQDAWGKPILKVGDVVQSLPLKDDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYITELELMSEV

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