Scaffold Ga0206683_10026380

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10026380
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3425
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F027651	Metagenome / Metatranscriptome	194	Y
F047304	Metagenome / Metatranscriptome	150	Y
F076483	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_1002638010	F076483	GGAG	MQMIKTNTLSQIFKEHNIEVDRISKIRTLQTFLNDTTLDIPLMRRLVTTVNCHWILRNVLVNNAEHINVNRIIKLIKEVI
Ga0206683_100263803	F047304	GAGG	MEIKAQNWGAVITKDMVTEKEIKKLKKDGGFVKCPTRKAKGSKNARWGRCE
Ga0206683_100263807	F004418	GAGG	MKKFLNWLKDDWMNHRFRLFCESIGSICFIAIYVLMAWYGESVSILTIFLIQIVGSTLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSI
Ga0206683_100263808	F027651	AGG	MRNKDKSNKDFQMNIKELKKDIKKTDLKWEVVALNNSINKNYYSWLSCVTDKKEYCIESRDFGHGFGVFSGSKYYRIEASEKSGCSSIIDQENSKLYKTAHKKKHVWGFIVKNDNETFKRGDILTKNYKLVGNVLDGELSNLGMPTSQYPNFQDCWAGSEIW