Scaffold Ga0206683_10015585

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10015585
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4616
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y
F078539	Metagenome	116	Y
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100155853	F078539	N/A	MTKPFTDRENFIVASVIMVVSNEMKKVSRDVRMSILQFIREERYPGVTDQDWKEIANGIDAHKKDVFGIMIKAFHESSSNPATSSNKALATLDTDMKAEVDDIDFDELKDIVDKSEDPKLREYYLTMKQLKRDFDDDRKQ
Ga0206683_100155855	F098044	N/A	MKSTTSTNTNSQAVLGINTSFDSMLAIESLILSNPMMNELRDVAKLTKTTLCKMALMEFISTPVSSRKLKRLFNAARDDDKFRAVMLGEKLE
Ga0206683_100155857	F042625	AGGAG	MTDKSEKDALWKDLKLQWSYLKRDSGADEVKKGAAKERINEIQEALKLDKTDWNQPRSGPPGSHLTKAGASPNPSDKILIEKVLGTVLDMKRVMNEEFMTITQKINSLDEKMKSCTCNCTMEKSS