Scaffold Ga0206683_10013089

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10013089
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5088
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005069	Metagenome / Metatranscriptome	413	Y
F012682	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_100130892	F005069	GAGG	MSDETTIGDIVALSAKDDAAGVKSAIGDVLQQKVMVSLEGKKQDFAKTFLTKQNTDSKEPESSEETTDGS
Ga0206683_100130893	F012682	GAGG	MAAETQVLVNNEKKYIAKFFSDASESDVKKVDLSTLTWAKHTLTLSAASTEKFKIGEVISTAAAHSAVADGSEFYIVTGFTAGATTVEVVGWDFTNKKAIAISDACSNGDKIVGSVSGVHTETVANSGNLTEHDYNVLVTKLMWTTSGLQVGIEWDGSTAEKYIAELAGNGSWSMPNMEWPGIGINATGDSGNVLGDIQFSTAGHGGTDSYTVIMECKKQAPGYDVPNYEENARLGFPVDFKLGNFT