Scaffold Ga0206683_10008607

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10008607
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6377
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y
F079215	Metagenome	116	Y
F105337	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_1000860710	F039339	GGA	MLRFEDVARVASSMKLVLEKRQHTSDGIVYQYSLYDNNEFVEDFFETLAQAWSYIYYYDEEREYENLRPNIESA
Ga0206683_1000860711	F038405	GAGG	MRISGPTLNQLRPLLTKALQTGAEVSFMYHSKRRNGPLKDFGWGPQGPFITIKHTKYVNGIDENGEYKTEIKSFSLAKMSELRVEQFVGAE
Ga0206683_100086074	F105337	AGAAGG	MARRKIVKRKGADKFSGRTKVKKGVIAVGFEIVHKINDKRWLTVSNVRPQNMLDLISQYNRGRYGWGQVRVKVKAYKEGCKVKRIGKGEKHGLVG
Ga0206683_100086077	F079215	GGA	MQNLYAAIVSMPSNGDARPVDNFEHLTIEYGGYSWAVKVPKGEFAQAHSMMSRVAEHDGI