Scaffold Ga0206683_10005929

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10005929
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7834
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_1000592913	F106168	GAGG	MVKLKTKMTRFYKRNKMLSLGIAAVGAYYLMSQRGMAPVLPAAPVKKATSAPVARYAYDAYTPVRNEPYYNSTHFFGPADGDPVFYGF
Ga0206683_1000592915	F083393	GGAG	MKLVNKIFKMADKYPLVTFAAGTLGIMYLFENYGNINGLGQATFKTSGSDMDNIFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDAKYHAQPLMMDPALEKMLAERGPRPVVQSASVRHGHDTHVFAGIKNMEMW
Ga0206683_100059293	F086698	N/A	VAGNNDTDKVQIHGTTGSGNVRAISALTQENNTSLLFTRQGREDFASTTHPRMTVPSHTIAKQLPLLCGLQDVVAQTGFLLTADSSNTVTVMLGGNSVSATDGIPLVAGQSIFIDIVRLSKIYAIAAADPSSGTCNLFWLDM
Ga0206683_100059295	F075433	AGGAG	MSDEIVMAKVNAFANELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFDSIDSETGEISHGRREDYGE