Scaffold Ga0206683_10003495

Overview

Basic Information

• Taxon OID: 3300021087
• Scaffold ID: Ga0206683_10003495
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10399
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F069450	Metagenome	124	Y
F080151	Metagenome	115	Y
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206683_1000349513	F007550	GGA	MKKLFLLCFLFSVSLNAANLKIVPVQQKTLPNGNAYGLESGIYFELTNLEPFIMYKLQYSEDLRKWTDLVHLGTYKMAMTSPYWTWDELPPHKCFFRIVVAW
Ga0206683_1000349520	F096037	N/A	MKTTVYAWGAEKNNVLHIYAGMTTQKDLGIRLNGVKDIMVGAADSWFGGPEDSSLGAYNLDLIYADSTQNYSRHKEQRAINAVWAVEQKYRNASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGRVFQAIESWIKEKVQDSTTLKRKFETALIAKQQKQALIANITKVLGLEPVLA
Ga0206683_1000349523	F069450	N/A	MSNIDQIPGVPSWERVKQLKEAAARYPKSDWSEGSYNDIFRKAADAKRKKYGTTCSYNGY
Ga0206683_100034958	F080151	N/A	MSESYYVKDEDGLFRMFDVSHDGLEDAIEAANDAGVDVLRDRDGATETVWSFDDAGNDEPWDGFNSDAEADADALASAGWGTDEDYGGCDDYGCEF