Scaffold Ga0179596_10000149

Overview

Basic Information

• Taxon OID: 3300021086
• Scaffold ID: Ga0179596_10000149
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49517
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (87.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015573	Metagenome	253	Y
F089922	Metagenome	108	Y
F093325	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0179596_1000014933	F015573	GGTGG	MPEPEHSSEVYLERISKDMKLVREMLTTVVTYMRDAESECSEKMRRFIMYMHDVHDIAHLYEERGLPVPRHVMAELERCDDRYRQLLEEAHTDGGTFEKVRRDMSQDPANRWDHTRQLSKPKENGSL
Ga0179596_1000014934	F089922	AGGAG	MKQGKASVSGSYANKVEPKPKIVNPGAVSYLGEKVGNHSTDTGDFTFQATPWSGGRGYMAPSIGTKRHKNGSQGEH
Ga0179596_1000014961	F093325	AGGA	MTTKANPLSYLNFWEEAAALEFGLLVECASEGDKRLLVNALYECRKQSGGFDNLMIFQPNPPNVLFIAKKTTELE