Scaffold Ga0179596

Basic Information
Taxon OID	3300021086 Open in IMG/M
Scaffold ID	Ga0179596_10000034 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	166477
Total Scaffold Genes	145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	107 (73.79%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

166477

Total Scaffold Genes

145 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

107 (73.79%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000290	Metagenome / Metatranscriptome	1362	Y
F000386	Metagenome / Metatranscriptome	1203	Y
F000407	Metagenome / Metatranscriptome	1172	Y
F032158	Metagenome / Metatranscriptome	180	Y
F075092	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179596_1000003410	F075092	GGAG	MHRRKVAMTAAAAFAIGVAFAAQPTSVRADRISGAVQQRQPWVPGTNMLMSAHEPSVVPLAPPR
Ga0179596_10000034107	F000290	N/A	MSKSPNARRLGGPLAWEELSRPDADQNQRFLAESLSLLLADLLRSVLSDASPALPADEFAVERYRNLADSLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPAPNSSTAAPMREFVDALALFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
Ga0179596_10000034110	F000407	GAGG	MLRSAAAAVAMAGLALAACGHSGYAIRPVPRIAADHVGKPVRELQEAFGAPRKIETTPTKLVYVWFLEQTPAGAPAGFHGCEMEVSVDPRSEHILGYSQSNIGWAKCSEIVRKTHVGER
Ga0179596_1000003441	F032158	GAGG	MQDSNGLKRTFLNRRDWGSYLRALQSAATYPKVREAVKSSRDWFTQGASQASNWLVGSTTELCDKLSSTGLRDTLSGTELHDKFSTG
Ga0179596_1000003498	F000386	N/A	MSDSASLYLNLHVPPDEMVKYIQDLMTLPHGEIAASSAMTLAQRQWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDRIQVPAALVAAAGVAPLVIDNERAVFDIPALLDATLEFQPPAGQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0179596_10000034

Overview

Ecosystem & Geography

Associated Families

Sequences