Scaffold Ga0206677_10091946

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10091946
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1451
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020899	Metagenome	221	N
F030730	Metagenome / Metatranscriptome	184	Y
F048329	Metagenome / Metatranscriptome	148	Y
F051961	Metagenome / Metatranscriptome	143	Y
F095050	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100919461	F095050	N/A	MSIRNSSSQKSNEFEVLLDISKEEDKFVVTLDVPQNNHNIVGSEFRIGYDNTRVEFDRIETTSNLQSFSAERTNYIKLGSISTDGSQNLNGGVQYKIYFSPQQTFESILGLLSVTKSELVKQNGGGIDHKIK
Ga0206677_100919462	F020899	N/A	MRKYIVLILFVILSCQPEELMIVEPLPQYEMIFEETESSVTDGQEFSFEIISEEEHQLVISKDGSVIAKESFLPTLELNTRKIYTKSLPTDLLQLELINSNGVIKSTFIQIY
Ga0206677_100919463	F051961	N/A	MPAKLKPSTKEYIKVNNKMTNKFFIKHYTVASTSTEELIKLYDSPSYKRKKELIRKELVKRGAWENLKKK
Ga0206677_100919464	F030730	N/A	MGKLKEKIIEKGSGLVAKSKTKKQLEKVLPKPLAKQISKKVGKGVESITSKAIDLWNKFS
Ga0206677_100919465	F048329	N/A	MFIFTEENIGDIKNAVYTTDGIPDKHAKKIEGIKDGLFKDFNYSKYKVKNPPKNTSMIVYNELQYLKDLP