Scaffold Ga0206677_10067432

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10067432
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1786
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011192	Metagenome / Metatranscriptome	294	Y
F020816	Metagenome / Metatranscriptome	222	N
F100938	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100674323	F020816	AGGAG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDE
Ga0206677_100674324	F100938	GGAGG	MSDWLEGTKPKYIECVYETAIQFDLEELDIDYDTIDDYHIKYGTLYVEFKDGTSESYEGNQIETDYKWAGEENVLDESWNKVEGLN
Ga0206677_100674326	F011192	AGGAGG	MTAKEMTDNDFINFQDDFYNLLEKYGVGKIDIEHSQFNSICNLRNKVVEFIEQETWEEDN