NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10056976

Scaffold Ga0206677_10056976


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10056976 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F013088Metagenome / Metatranscriptome274Y
F038657Metagenome / Metatranscriptome165N
F093807Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100569762F038657AGGAGMDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSAWVMPSGAEHAYLWQSFSFAESSAFNNICGLFWADKANNVGKLPVVEYKGSKHIQVGAGNSSELSFGFVKWGDRGFNVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDSDIPF
Ga0206677_100569763F006845GAGMKSYKRQMDLHSYLLQEDFEEFCRESYGKIQIACEFLGIINDEDYENFKERCYAQLEIDYINSIENLTIH
Ga0206677_100569765F093807N/AMKQRKTMTQFSDIVELHRLKLNQEKDEWYIHVNNGAGYTEVKQGNTLTTTYHADGRKEVVIDAN
Ga0206677_100569766F013088GGAGMDNSTKKALWIGEELHKDIKIFAIQNNLTIEQATQMLIKLGMVTYEAEKNNDTV

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