Scaffold Ga0206677_10056976

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10056976
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100569762	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSAWVMPSGAEHAYLWQSFSFAESSAFNNICGLFWADKANNVGKLPVVEYKGSKHIQVGAGNSSELSFGFVKWGDRGFNVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDSDIPF
Ga0206677_100569763	F006845	GAG	MKSYKRQMDLHSYLLQEDFEEFCRESYGKIQIACEFLGIINDEDYENFKERCYAQLEIDYINSIENLTIH
Ga0206677_100569765	F093807	N/A	MKQRKTMTQFSDIVELHRLKLNQEKDEWYIHVNNGAGYTEVKQGNTLTTTYHADGRKEVVIDAN
Ga0206677_100569766	F013088	GGAG	MDNSTKKALWIGEELHKDIKIFAIQNNLTIEQATQMLIKLGMVTYEAEKNNDTV