Scaffold Ga0206677_10026525

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10026525
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3345
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008281	Metagenome	336	Y
F037180	Metagenome	168	Y
F065243	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100265251	F065243	N/A	AIAAKLNVAGKKLARLQEAYDDYVITNEYKNICIESFDRAVNVEDVAEVVEEE
Ga0206677_1002652511	F008281	AGAAGG	MKLMCNTEHGAIQWRWKDLGQPSPAYKSLNHQWWIPKKSDLELVTKVDASIRQEVKDEIWEDMQSDYEYQKSIYKLHKANKRES
Ga0206677_100265254	F037180	AGG	MNELAKVDDKSTLNISLSYLLQIISVIALAVWGYAYTTEKIDFNEREIQNLRANQNKYIFPDIRVLEEQVIQLEKEVIILKTELEVYKKQNGNNK
Ga0206677_100265257	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRAMSDTYKNYTCDILAFVFFFDGQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLQESLDTLSAVPVLNPII