Scaffold Ga0206677_10011043

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10011043
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6214
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019559	Metagenome / Metatranscriptome	229	Y
F025148	Metagenome / Metatranscriptome	203	N
F053650	Metagenome / Metatranscriptome	141	N
F091975	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1001104311	F053650	N/A	MKRLIRKRRHMTYVRRYIVELQWDSLNTMLVASKTQWNDDIVRALDNNARLIRKYERRRRWLSF
Ga0206677_1001104313	F019559	N/A	MSEEAFNKLMGYPMETIEQLVKQAKEINRNRIIELNQRDLKENGIEND
Ga0206677_100110432	F091975	N/A	METQELIIAVATILGSGAAFKFYEYTIKNKRESARELRQEKRSDNPETMFREDLLKRVEEMSIALETAQGKILGLTQKVAELETENRYLQREIDILKRK
Ga0206677_100110439	F025148	N/A	MAKIDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASIKQLTDMAILDHVRAKNPQGDFKHDEPVVKIKSINVPKAYLANRQMFDGLIGDGSEIRANVWIKKWEHKGKKGLSIWLSAFVITNLVEYANDSADALFEGLPDVGELPSGFENVPTEKPNVATAGDAFGESNDDLPF