Scaffold Ga0206677_10009615

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10009615
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6853
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F077258	Metagenome	117	N
F090391	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000961512	F090391	AGGAG	MKDTVKIKREALEKLFDFVRKDIENSHLETIDNEDLEYIINITDALMAAKYSLGLYENETNVFIEIKYLEFLAQIVQDCFDFIAPDTDWNCLTDMLATNLLANALLNARQAIGIEPETKEEQSK
Ga0206677_1000961514	F070557	N/A	MSNEIKQNIIRDLQGDVLSGDHYTINMFSCWLDGSYLGEAHYRKNLASITECNGNRKKLRSFVINAFTSYIAHDASCSYGYAQKVLVEFLGLDTLNKLNEQLIDNTIEFHSTYCEAA
Ga0206677_100096156	F077258	GAGG	MSIDPRTVRQIKMAAEQGLTQAETSRLLDMNQSYVARAKALYNITFIKHEDKYAHFRSPQNDIETNENELNDDRGHEKPRPDQGQEILQMVSTRTATSDGIDGIEIEKPPKTIQELKERLKQNDKQHHYEIIYSFKLQEFEKQQIKLGLRTPLHRGRKIQSLSTSCANKNIALNSQSFPAKHTVAKQQRILKSINRGGRYTTSMIARNTGLSVSYVAPQLNVLFNQGLILRNNEKQPAFIGSLDGKKTYRHVYFKKNDE