Scaffold Ga0206677_10009292

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10009292
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7034
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022080	Metagenome / Metatranscriptome	216	Y
F024647	Metagenome / Metatranscriptome	205	Y
F038851	Metagenome / Metatranscriptome	165	N
F103238	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100092921	F103238	N/A	IKEIVNEVLTINLVDWLSKSQIQLIELEIEVAEIDEKSVCEFIFDKSVTFKCSLMDD
Ga0206677_100092922	F024647	N/A	MNYLVNPSNIVSRALGIDSFKQMINDEQIQFSELVDISVQIAEEWTNDWDEGDGFGSSDGTYLLKDFIDTVISNFTNSVYNQSGYQTIFNPTLSVTYKYSEPELVSFEDDGQF
Ga0206677_100092923	F022080	N/A	MIKETHIGLVRMNESKTELYGVQYMLSKWERNLGDTLNIDGTKWLVGMIGDTKNDVISALNTIIKKQNSIINKKKYQEKKKTDMIFNNILNDIMKEINL
Ga0206677_100092924	F038851	N/A	MKIPKITKPWSKEMYEYNDYVANFMKIEIETQINKAEKNDDFETLNELMVLCGGIKYGDGYTLGELWEDCLNELHNVQNYWLNEEYPYYVKKGLVPPVTLNFIGYDK