Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10006984 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10006984 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8482
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8482

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009717	Metagenome / Metatranscriptome	314	Y
F019559	Metagenome / Metatranscriptome	229	Y
F022858	Metagenome / Metatranscriptome	212	Y
F053650	Metagenome / Metatranscriptome	141	N
F062719	Metagenome / Metatranscriptome	130	Y
F091975	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000698413	F053650	N/A	MKKLIRKRRHMAYVRRYIVELQWDSLNTMLVASKTQWNDDIVRALDNNARLIRKYQRRKRWLTF
Ga0206677_1000698415	F019559	N/A	MNEEAFNKLMGYPMETIEQLVKQAKEINRNRIIELNQRDLQQNGIEND
Ga0206677_1000698416	F062719	GGA	MTKQEIFEEPIWPSRLIFNAKLLLNKQYKDCDFDERLTIRCHILGINKNEIE
Ga0206677_100069842	F009717	N/A	MYIRINSSVNLSSGLTIPSGSVVTIAEGYADVKSEADGIIPAQVATFLYASEAAMQGDATPVQGVADFNPVFSGLELAVADYETDPAETLLVNAVKDALIAVYGAENVEVVS
Ga0206677_100069844	F022858	N/A	MKETLTTIKTNIKTILSFADSEFLELLIAILHTFLLPLAVWTEIGFKWHVIFMAIAGGLFQFYSVGIRNLKCRYYSTIVATFVSILTTEQYLMSGLMFEAPSRFGWLIIAFAAIINQIRVTKQWKHKN
Ga0206677_100069845	F091975	N/A	METQELIIAVATILGSGAAFKFYEYTIKNKRESARELRQEKRNDNPETMFREDLLKRVNEMSLSLETAQGKILGLTQKVAELETENRYLQREIDILKRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10006984

Overview

Ecosystem & Geography

Associated Families

Sequences