Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10006963 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10006963 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8500
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8500

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F013639	Metagenome / Metatranscriptome	269	Y
F038657	Metagenome / Metatranscriptome	165	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000696311	F038657	AGGAG	MDILGGMQNSEEKPQIYFGFKTLGQQFFANGDTPVEFKYLQLDIDTFKSGWGRYTKADGFEYKWDAKFGVVDAKPADDWKRAFSCWVMPNGGHAMLWQRFTFAESSAFNKILGTFWHEKDANVGKLPVVEYKGSKPIQVGMGTSSELSFEFSKWGDRGFNVPEWYVDPDAPVSDDDGFVSPNEGLADLVNKAEEDNSDVPF
Ga0206677_1000696312	F006845	GAGG	MDLYSYLLEEDFEQYCRLAFERIQTACDFLGIINDEDYEGFKERCYTQLETDYINSIDITIH
Ga0206677_1000696314	F093807	GAGG	MTEFSDIVELHRLKLNQERDEWYIHVNNGAGYTEVKQGNILTITHHATGKKEVITDAN
Ga0206677_1000696315	F013088	N/A	IKKALWIPEELHKDIKIFAIQNSLTIEQASQMLIKLGIVSYEEDRNND
Ga0206677_100069634	F013639	N/A	MKVDKKKLKEMIKQGKSSHDAAMSFGCSPSTARRKAKEIGLKFKAKSYWRKG
Ga0206677_100069638	F002221	GGAG	MKTYLDESLETKLCELRTYEAESFEKWGSRKRIFKMLGVDFEIKFCRAETMLRDTLYKGKVKEKLKMVDMMLRAFVALNKKCEESGYIMIQPNTRCFNFDKKTALICDTDDEKPILEKIHKNEPEMMIFSIEELLRCIPEDFMKAKELLSKLDRSVNFKRINHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10006963

Overview

Ecosystem & Geography

Associated Families

Sequences