Scaffold Ga0206677_10006696

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10006696
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8741
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F048332	Metagenome / Metatranscriptome	148	N
F077338	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000669613	F048332	AGGGGG	MEILKSIRLRQLKKERELIKANREAWIKLHRHADLDASLSRTFLAYQNALNKINASIRNLKNGY
Ga0206677_1000669615	F024563	AGGA	MKIEYTTKKDLIKQIEDKGFKPLSMNATIQDMKIYLLALNVEATLKKVAKQVTK
Ga0206677_100066968	F077338	N/A	MEKKILQAVNLSPSEEWVEKLTEIHPMRQIFWASIIQVTVFFGMLGMFQINQWIFSH