NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10006041

Scaffold Ga0206677_10006041


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10006041 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9358
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F071124Metagenome / Metatranscriptome122N
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000604110F073499N/AMMTDQELEQWLKDNPWKAYVVYPFGGILGALFVQYSCIQIIDSFLTGKIT
Ga0206677_1000604111F001655GAGGMKQPENSHTKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMFEHFEASVHRTAKALKESYTYWPEGYVHVQTLINDEYVNMI
Ga0206677_1000604112F002858AGGAGMAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILFLASDELPEIEGDV
Ga0206677_1000604113F023856GGAGGMRCRACDKILEDSELTRKDTHGNFLDLCGSCLSASANAGVDPDTMQYYQYEVFTDEDKCDTLY
Ga0206677_1000604114F071124AGGMTYAEYELGYYMGDSEDYSGPPEDPETQAMLEHLIEYETEMFKLECRRRYSGCTYRQLRSLLINLHGEDWKNAL
Ga0206677_1000604117F008883GAGGMNFGHYTIWYNHEDHVWDIYDGRKGFKYPEYTVNNYSRLLCTLRAKLSRFDTDRNRGLFYRFTRFIRRIRNV
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