Scaffold Ga0206677_10004831

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10004831
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10842
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F054789	Metagenome / Metatranscriptome	139	N
F067591	Metagenome / Metatranscriptome	125	N
F090175	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_100048311	F009527	N/A	SVNLLLQEGQRWKVDGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPEHWSGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDRMLVKAPFPKFLSKEVDAKKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRQKRKKVEP
Ga0206677_1000483113	F067591	GAG	MATWQTQVKQISMALSVVGALWMALTVGLGDAFNIVTDPASVDPATAASLGGIDFIDRVAVAGVFVTLLGGAGFGLVSVSGNNPPALNTILRYAPMIIGFVAFSAFGSEAWDLISGNRTWANYDDVQNSYMLFLAASLTSAVVGLIDRR
Ga0206677_100048312	F054789	AGAAGG	MTREQQRRFDRMAAARLSKMNGGIPRHIALSNSKSITLRNKLKRLGIEGNHVNAALAMVDEIGLQEVMSRQPLGSRFASMPQSKRKAKVWKP
Ga0206677_1000483120	F090175	AGGTGG	MSEEETAASSHKGGAKGRTWADVFVGASYLTGGGLFVVSMAVLLYFLVGEVPAWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDVKNKTAIGSEFANATQIDQVRDLTTLQQMVELLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETSVELEIDDTIEDMVEDFD
Ga0206677_1000483121	F009527	GGAGG	LKRNAFPPSIVNLLLQEGQRWKVDGSMREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPVHWAGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDGDLIPQERKEWKGEIEHGQYELSKICKDIRFRDYFWSAKDRMLVKAPFPKFLSKQVNAKKADLLSRPMRYHSIEDKEVML