Scaffold Ga0206677_10004414

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10004414
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11511
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021673	Metagenome / Metatranscriptome	218	N
F051048	Metagenome	144	N
F067197	Metagenome / Metatranscriptome	126	Y
F090257	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000441413	F051048	AGG	MYSFKVSKMKKAETVAFDSADIWAAAVYAQRINGGYNKEDLWSVDPDTHLVEEEPHTLANRTVARKVLAETPGLITVADRVKGTEVRKYISSKLMLKALTKKLSSFDESLSHAVALEEFIVPQDKMYIGIVNSQITAYEKMKKEEALLKDFVYGTYGKVGSRLDIKVIPTSSFWLTDWGTFRYNSITEDNYKTSFYYKEKLEIGVAVKVRGTVKSHTADTTTINRVKVLK
Ga0206677_1000441416	F090257	N/A	MFKGKKDIDDLFGENSTVAGLVVAICATMYDNGVRVIPIGGLMRLLGVPKEKAEQHDDKAFELSDDFYEQLEEMGFEKIDDSQLQIPNNKTLH
Ga0206677_1000441423	F021673	AGG	MKSVWSVTICGKNDCVPLTDEEANMLALKYGKHIAMYDMTKRHGVKPEYLHKQLRHEQREWRGVSFSKGIKMGSFGGAAPVNWTYDDLINVNLEALNG
Ga0206677_100044145	F067197	AGG	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEK