Scaffold Ga0206677_10004265

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10004265
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11749
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F033111	Metagenome / Metatranscriptome	178	N
F034245	Metagenome / Metatranscriptome	175	N
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000426514	F033111	GGAG	MSNRNEIPYYFEIPELSMPTFDVKQYFVSEEERTIARTDVKTADRLTGNSRSNTANWYQSFIKVEENSSQDRRDFSQVNLYEEANFDLTKLLKEWLHDHINLKFTSVLMLRTPANTNSRWHCEGPVFHTRQCALNFPVSGDFTKSEAQWATFPRFKNIDPRENEKHGFVTQTDMKDTEMLCRWDNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVHKKYTAGKLFK
Ga0206677_100042653	F089156	N/A	MVLFQFEQSIVTDNLPVDVIKVLHHHTYLLDVQLNEYDLINQITSNFDVVSMQSNNDCAYIDVYERLTTSYTVLQAEDKLVHLIEKLDLLAFTEPQIICISWQMDRNYIVDYRINRLLEAGHKVVCAGGNQDLPVLDISPVAVDGVIRVGGNKHNGKYQNWIDLYDITVPDINCSNEAAHKVCEIMTNKELELEYKLDFYSESHIRSAPWPLRLAQTPASNHKLYEFNPVSNLRYIAGEHLLPSRPGDVTSVLSGSAPLANFVGVDNIELDSDMPRGITFDPNVGWLYGTFKYKEAMFHKILADINGQLFEYHIISCDADSKPSYDEVKQTYFNRPYDAPPFTLREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRSYE
Ga0206677_100042654	F034245	AGGAG	MRGITFSEFSGGQNVDMFLHAPETMPGTPMQEAINTAITIREKYTKDIYVWCDYSVQHMYSQLAMQAFKMAGIDFKAAIPVLSNNLSKRENECTIAYCESRNIQYELFYIDVPALFDGPDFLYWGEHFPTTQPQMTIVGQFFDLLPDCCLVYPGFMMHVSNSEWTRSKNNGFMPFVPHATQEHAAAHAGLEYTNFQEHYVNMYSSWFFTQSYSQVFKMATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSFFGHDKYDKELRQKLMPYGPLTMKYASLQYTVKVDTKLKDMLETYYETNFEFLNKLF
Ga0206677_100042657	F022909	GGA	MANSNDQKILRTFFDGKIGCVELDDYWMPKLEKFCKIAGDLGFTQNASPEAMKVDQIKYHCMVHIPTEEIYAVAGVQYMPEYKPGYYRVWTRLSRIPNENIPMTKMVRYGRGHEMPEFDGLLYFNCKWASEQPDFKATFGTTLANKAYSDNYVKSTNTISDYIKRNWWKRKGIAVPEGIQDFYRVPQIVWNISFEKFKEFSV