NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10003098

Scaffold Ga0206677_10003098


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10003098 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14216
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (27.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031840Metagenome / Metatranscriptome181N
F041775Metagenome / Metatranscriptome159Y
F072343Metagenome / Metatranscriptome121Y
F086721Metagenome / Metatranscriptome110N
F096845Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000309816F031840N/AMNQSTSTMKTFDDLTFQPHANLQDLGVQASLTLDNGYAFSVVGNTEGGDFFYGDHPNTYEVAVFNQRGDFVPLGKHDDVLAHQSPLQISKLIKQFDLDGILHEKLLVNIKQDNIQENACK
Ga0206677_1000309818F041775N/AMRLNDPHHLQIQDLDALEANELAMAFIHDKLIEPMQENNLLDEDAFSLLNVVGGALKAIANKAHSYETLYENKTNASFYRN
Ga0206677_1000309823F096845AGGMSTNGIAKLNAKLRTIGFQLAQAEMRGMKGGNYFARKLAHGILLNQLYDLEKRA
Ga0206677_1000309839F072343N/AMHTRREIDHILDDINKIIANKKTSNKESEDDKAMLKHLYDTINLKTDNGKRAKGMWTDSPEFVSIQ
Ga0206677_100030987F086721N/AMKIKDIIFLKANDNQVSAHLYYSTEDVVCESMSSIGVSRKQAIFNLCKQGKLSWDLFAEAKSLALTKKDPRFEKKTFVSRNSVRDQRLADICDDMRCSVREAVAFLDRGVVPCGW
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