NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10002960

Scaffold Ga0206677_10002960


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10002960 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14594
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F022080Metagenome / Metatranscriptome216Y
F023218Metagenome / Metatranscriptome211Y
F031507Metagenome / Metatranscriptome182Y
F034716Metagenome / Metatranscriptome174Y
F057374Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000296022F022080N/AMIKETHIGLVKMNESKTELYGVQYMLSKWERNLGDTLNIDGTKWLVGMIGDTKNDVISALNMIIKKQNSIINKKKYQQKKEEKFIMNNILNNVMKELNL
Ga0206677_1000296023F031507N/AMIKVNDKIKFENKYGQIQEGIVTDNNYQCEFDADLNGCIRVSVDYGSSIIGTVNTLIDKSQII
Ga0206677_1000296024F007723N/AMIKTIKSKLLTYLFKDWVMNETDLETLKVSKQFIKKREIEITGHVPVMGFRSHIK
Ga0206677_1000296029F034716N/AMKDIYKQKVSNVLDSCVNKSKVVKEMVTGERPADPKTASTYLQQIEKSLEEVKEFIERG
Ga0206677_100029605F057374N/AMNKVFLFILLLTSSLLSSQNFVGENFRLSTDSGNVVITFEDQNSDGTYIGGVLTKSFGKLTITKKEFQTKFIPNLKKISGKNDYEIVEDSYRLDKYSFDTEIVFIQVGNKIGSITKQEIKKLRKL
Ga0206677_100029608F023218N/AMRFPSYKRPIRYINNTPYIVHAIIPIERCKNVNLIKEWLGVDTAFKVQREGNYWFCEIIEDIKWEQV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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