Scaffold Ga0206677_10002412

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10002412
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16390
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F013099	Metagenome	274	Y
F050298	Metagenome / Metatranscriptome	145	Y
F067630	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000241220	F067630	GGAGG	MARLDIDTTTLEVAGRALDLFKEQYPERITVWAETADGQLDIKIGSIHKHKSERGGSMRHHVYFNKTRTLLEV
Ga0206677_1000241221	F004646	GGA	MGKVNALFQDAQEAREEAQMHFPNYLITDVPHEKYDNYDMLNKLFHALAPHGWENSTWKNDTCPSLQKEEIHGNVCRIFVDYLNPDMREDPSWALLAYTVEDREGYLVLQEGFDNVDKLIIFLTETIN
Ga0206677_1000241224	F050298	GGAG	MTKTIEKIRDLGYGWTGTLYSDGTMRVQGDLQGSDCIDLPKASVDRLSRIFREIQSGITIQVEEEVE
Ga0206677_1000241231	F013099	GGAGG	MVSTWLLIWFVFVPELGIKYYHLGTYENETFCSTALRDAAVMVNDKNETVECIGVQVDG