NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10002168

Scaffold Ga0206677_10002168


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10002168 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17634
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025262Metagenome202Y
F047686Metagenome / Metatranscriptome149Y
F061772Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000216816F025262N/AMSKGEIIDFVVLRITTELDKFQRTTTIPHTLLEGAIELQEIQDVYYEKLPTKYQKIFDKLYKEYHQNIGENFESLKKAMKNDYARFVNHKATEHESFRFKEIMNLYRPGMNPVRAMYYQSREVIRRFNPEHPFHYWLVDLVTDYEYNNIILDALGKDVRNLERIIKRYYFPLVNHGEGVPLELFHAKQQLKDFRHYYMFFRNLKDWSPDE
Ga0206677_1000216819F047686N/AMQLKNIAPRYLKTVNRLLFIITLTFPLFLTAEEIVLSPSYLPEGSVLDLTYNPPLDPYYCDNNPELCKVIETSDIPKFDMTPRATNGQWIAFWTFQLLDVYSTSRALKYDCVTEINPLFTESPSDARLVLTKTLLLVPGLMYNDYWKEVTPNELNDTNMVYSIVVANNFRLLNKAKQYCNKIR
Ga0206677_1000216821F061772N/AMTHVTKYTNSLRNYAIAVASVHAVALGWLYPNVLMLIVVPPIIFYLLFLYCELMYEIDEGTRLRLLKAIREADDPITKDVLTWELILHEEHTIFGNNSNDRLGF
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