Scaffold Ga0206677_10001439

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10001439
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22033
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011311	Metagenome / Metatranscriptome	292	Y
F025037	Metagenome / Metatranscriptome	203	N
F043416	Metagenome / Metatranscriptome	156	Y
F067762	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000143921	F067762	GAGG	MYVKACSECEKFVTGNPVYHTPNYEHVFCDAYCSNAWYSKTFVKMDAKKDQTESNND
Ga0206677_1000143938	F011311	AGGAG	MYIIVNKKNDSIHSEPTRRSYRSSQYKTEAAAKAGITRTVKFYDKAKAQVAEVVAEGKSEYHAPMYNAFRDATDKDLGRTHCADKNNYRVMHVEEYALIEPMITKTGIAPGTGKEITVTYSINQPHYMNPLSETYWSA
Ga0206677_1000143944	F043416	GGAG	MFVKLRDWLDICKVHWKEIFAMSFMLHFVMDLLFIGPLFFLLGYFFGISMEH
Ga0206677_100014397	F025037	AGGAGG	MAISDEMKEQLEMVIQYGDQVKAMYKEQDDVDYEIGDYDEPITQLLGHMNEIMEAIDGGW