Scaffold Ga0206677_10001019

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10001019
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26366
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F050682	Metagenome / Metatranscriptome	145	N
F060809	Metagenome / Metatranscriptome	132	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000101926	F050682	N/A	MQNTKYTNTVIATIENLATKIKAAAHDSVAEKNDYSILDNVQALQYVYANYAQHTNAASLANAALSSTLDTVVRENIHAQLTYIN
Ga0206677_1000101941	F001588	GAGG	MQKTNNVFLNAQDAVIVVTVNNVQVAAVNTAAQLAAVFKQHNINWQTDTIMCSSSIDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0206677_1000101942	F060809	AGTAG	MYTVNTQVFTNLNNNTVVNFTLTQAHKAFVVQFIADVLQNLTALNASCVTDDDEQYFVRLQDAMEVLDNLQMLYATADDDSAVFTFTLAQAAQALLCYDTEYRECIAEQFEDACNDAAANDSTFANLAANIFAAY
Ga0206677_1000101960	F103560	AGGAG	MPKFGHTVINYNTLLIVDLATQQQRYAHNVTLPCLYTVTQAQLSKLYKTASAN