Scaffold Ga0206677_10001004

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10001004
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26615
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.05%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F008425	Metagenome / Metatranscriptome	333	Y
F015210	Metagenome / Metatranscriptome	256	Y
F024797	Metagenome / Metatranscriptome	204	Y
F029447	Metagenome / Metatranscriptome	188	Y
F040126	Metagenome / Metatranscriptome	162	N
F041804	Metagenome / Metatranscriptome	159	Y
F042621	Metagenome / Metatranscriptome	158	Y
F049672	Metagenome / Metatranscriptome	146	Y
F059985	Metagenome / Metatranscriptome	133	N
F067802	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000100410	F029447	N/A	MEIKSLTLKNRLIIDETGEGYWDLTAPSFVYDSDLGVRALHYVQPDQIGRIDKISNLYFGSGEFIDAICVVNNIFNPFTVSEGDILVIPNLSRKDLVYKRPNPASRPNATQEAYVDTGRQSEKDQARMQRLIEKAKSSENGVKQPMPPNMLQPGQEAKTYSGGKIQLGTNLPSRTTKQSN
Ga0206677_1000100412	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPVKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLESRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNIRFKKGWVDKFQKGDIDIDKYLNSLS
Ga0206677_1000100413	F008190	N/A	METNIEFNFIYSKDAVRVKAFLGNVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTILDRSTTTSIFYVLGNLNEPTVEGIKKYVESLSDKEFQYNIYHSPDINVNGTARLFENVVEFE
Ga0206677_1000100414	F059985	GAG	MIKIVLEPARNGVIKRVIDDNHGGGKEQWTSTDVFESNDDHRNKFEYIMKFFWELCEDLGLECGNKFEKDVLKIGKEWGTHYEPNKKEIESKIKELQAEIDLLTEWKQT
Ga0206677_1000100416	F042621	GGA	MESIEQERLQWIKGDKFGSVETIKGTEGEWTTFEGGGRIATNLLSEFLEPLNGEPLDFNPPTPALTKAAEVYKEKLPPKKETSSPIRTLFDKQKKNDKVKLNLTFPIEVPKKAIYEIISSSFDSEEVNDELESFIKNQISEDLILDSLFDSIKELIKSRYKID
Ga0206677_1000100418	F041804	N/A	LVVEALTFKLSLDFFTYLKKYKIDVTKIRIGFYDQAAGKSEYTDFNSVAEMELFYQTNYVPFDPCYVGDLASIQLFLGGSSLYEFVTEYRASDLTGDFKLTSGSSFDIQRNAQRSVLVNRQIEFINKSVNDYKGYWSEINRIYTSGIYSPCYAIPGWSEGTWYLNQLREAFIAQRDTSEFPYDDVNIINEPPE
Ga0206677_100010042	F067802	N/A	MIKEIYSRDIEAPKYNDDVIEVTDQLQQLILKIENCLFTRQGEVLGAPNIGCNLDDLVFSLVLNESVIAQRITSQIQSYCLNSSSNAFGVDTRVQFYSTVERNGCLVDIFINEERVIGAL
Ga0206677_1000100420	F015210	N/A	MDLFEKYRKWGKDITVFDVDDTLIVTKSKIKVFNPKTGYEIDLTPQEFNTFKTKPHDEFDFNDFRDLEILKAGKIIDWVFKILKRTIAKGTAVGIITARDDSKLIYDFLMHNGVDVNPDFIFAINDPNLGFTGSTAQKKKDAFMKFVQMGFRNFKFFDDDKENIRIANSLNKDLSEVKMKATLIKQKWIPNFSDFK
Ga0206677_1000100425	F008425	AGAAG	MADKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKREKWFLNKAYDKREDGKVIIEPSVWITAKQMEHHMDHMVRMGYKYYINE
Ga0206677_1000100426	F024797	N/A	MSEFLRTGMGRKLLEKDIPKLTSVLERIANQLEIANKLDEKKFALEEKLHRIAIKEANQNGR
Ga0206677_1000100427	F040126	N/A	MKKVPLFEDFVPAGFAANNAAQFSLGGVNNTETGYNMDAIVGPVEQCSNHVAEQANSYESNDNAEHTAEAYIKEAKKHINDKIDEACESYSAMSESTLNEGTDISSWNQAGIKGDANAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0206677_1000100428	F049672	N/A	MIPKFENYLNEASDYEFNPNEAARRLKDREKENIQRYRAAQERGDNYAVELYELKIKMDKIDLEGLKVQTAIHQLKQKNGK