Scaffold Ga0206677_10000710

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000710
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31687
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (55.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006585	Metagenome / Metatranscriptome	369	Y
F044468	Metagenome / Metatranscriptome	154	Y
F068255	Metagenome	125	N
F079988	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000071021	F006585	GGA	MALNKLQKKDFSIAVKTGTDANKTKFAKECVQGEWYFATDTKKLYMAETTAGALDATLVQFNPANTGV
Ga0206677_1000071024	F044468	N/A	MLTHDLNVTAGRPHTASGIPEGDLGPDGVIQTEAEDFLQVEAGQFLAFD
Ga0206677_1000071039	F068255	AGTAG	MQNDDTFEVSDWDHFFANWPTREEVNDGWHQFWGNNQLLRTYRDKSGKNLKDRNGNILITRSTTPRQMPIGNTVSDFMNYARPNRSN
Ga0206677_100007105	F079988	N/A	VFVLFVLFCVGTMPKKEGLTQPVNIRYSKYVRERVKEIAGDTGLMQAQVFDYVLQGALKALEGEEGLQLPVRLKVDR