NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000710

Scaffold Ga0206677_10000710


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000710 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31687
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (55.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006585Metagenome / Metatranscriptome369Y
F044468Metagenome / Metatranscriptome154Y
F068255Metagenome125N
F079988Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000071021F006585GGAMALNKLQKKDFSIAVKTGTDANKTKFAKECVQGEWYFATDTKKLYMAETTAGALDATLVQFNPANTGV
Ga0206677_1000071024F044468N/AMLTHDLNVTAGRPHTASGIPEGDLGPDGVIQTEAEDFLQVEAGQFLAFD
Ga0206677_1000071039F068255AGTAGMQNDDTFEVSDWDHFFANWPTREEVNDGWHQFWGNNQLLRTYRDKSGKNLKDRNGNILITRSTTPRQMPIGNTVSDFMNYARPNRSN
Ga0206677_100007105F079988N/AVFVLFVLFCVGTMPKKEGLTQPVNIRYSKYVRERVKEIAGDTGLMQAQVFDYVLQGALKALEGEEGLQLPVRLKVDR

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