Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10000562 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10000562 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35265
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (91.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

35265

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (91.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005350	Metagenome / Metatranscriptome	403	Y
F014905	Metagenome	259	Y
F017486	Metagenome / Metatranscriptome	240	N
F048584	Metagenome	148	N
F049548	Metagenome	146	Y
F060810	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000056210	F017486	AGGA	MNKIIITNAHAHGFAFACDMETQGQVFIPIHIAEGFDLAPGDEIEAVLVPNYQDKSDKGTPWQAVKLQRSNEVCEKAIIDNSQTLNNEALDAEMLTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTIILWAAAAKTFIEVV
Ga0206677_1000056212	F049548	AGGAG	MNERQNQIAECTKDFLVALPKNIKGIDLGAIVCTIFESFDLDHEERAHICEGVLNIMLEVDMRKDERAAQAADDVIARAAAKARK
Ga0206677_1000056213	F060810	GGAGG	MSIKVGLPDVTFNALCKLTEVDREFIGSPDYMGVAQFWEWSHPQNTRLSRASVSARRKIHAALVKDGLDLNGDTGIHRSIISIVLEKEEQGL
Ga0206677_1000056221	F048584	AGGAG	MQDYQLTQYCNDIAEEIARDASDIEQAIDWAHESADGSEYVIYYAKAHAICQNCDIDQGEEFFSECYGGEHGKSYDEIACIMAYGEINARICARLWHIFEEREEEAA
Ga0206677_1000056226	F014905	AGG	MKPVSFNKLPPHIKNVVMNQWIKAYIGKGLTLEDAQYAARWRAGHWKLSARMEKVLADIEDV
Ga0206677_100005625	F005350	AGGAGG	MEDWINCPECDGEGEVERDVWVRQSSTWHGDFESVMEECEVCSGIGQIDPLEEDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10000562

Overview

Ecosystem & Geography

Associated Families

Sequences