Scaffold Ga0206677_10000533

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000533
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36078
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (42.86%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F035084	Metagenome / Metatranscriptome	173	Y
F047319	Metagenome / Metatranscriptome	150	N
F060424	Metagenome	133	Y
F077184	Metagenome	117	Y
F083396	Metagenome	113	Y
F103086	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000053310	F103086	N/A	MTKASTFYKRNYTNGYQAKVEYWSTELAIYTKYEAQDKMLMAKKKLDYFVDKQIEYLNKKQHDLLAERIGVVSQDGFEIKTIQK
Ga0206677_1000053311	F060424	GAG	MTRANLLSKIEETYNKIYAFTDRMDDEALNVLDEYVSQYKLDEEYSILIEALCDDYDPTNLSKDTLSYLLDAHKEALSDLRCE
Ga0206677_1000053316	F035084	GAG	MSKGYDAQDRVLAGFRRAAKSSNINSAVAKAMRNKKKVKPQNEEVVFSPLALIQLLNG
Ga0206677_100005332	F083396	N/A	MSKEDEYHYENQAETLDKFRRVLMNVFDGDADAMLGNLEKRMVENEDYETAAQMRDIRSRINE
Ga0206677_1000053321	F015933	N/A	MKIKENIEAGMYFKFKKEEFKSYTEDVYNVETSKDGFITLHRHHIHSKTGEYIPTDLVVVRRIGENSLDYYKHDMFGKKTRGRIHYNSIDSFFYIKQDVEGKDYTHIEKAA
Ga0206677_1000053327	F025153	N/A	MIKLKDILIEQIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISGYAEQIMNSDAPDEVKQNASEILNEMEKVAIDIQDELHTRQISDDEVAETIFDYVNSEMDASDSIEFEQLLWYDNQIDSSINSGMIENAVAILDQLLHQLEFIRGFILQEFPKISPAGFKR
Ga0206677_1000053330	F020797	AGAAG	MIKLENILKSIPNQEIVESHLGQWEYPGRITRIPNNQITMQPDPRTGKEIEHILLIIGDQSGEKQIGVPNGPNLLFPNDQSVTEYPIRKYEVYKSRKK
Ga0206677_1000053338	F047319	AGG	MYNQGETVIVTEYINKKANEVKHSVGVIMRPFIHKKQTFYDVLLERRTGLSFLNTAKSSKQSFINRELTTKLIDSDSIETTIPFKAMLEFEELPIMIA
Ga0206677_100005335	F077184	AGGA	MKRKMRTYRITSTILMVICVVLLIKSNSHNIEKADIIDKYFDLQSEYDKIYDDVQQLEVYSERLENQIDILSSFIADSEYEIDTVTNGKEVVR