Scaffold Ga0206677_10000430

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000430
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39324
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029448	Metagenome / Metatranscriptome	188	Y
F059988	Metagenome / Metatranscriptome	133	Y
F071751	Metagenome / Metatranscriptome	122	N
F076123	Metagenome / Metatranscriptome	118	Y
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000043026	F029448	N/A	MAISVTEILGTDSLSGSRLVLNDNFNILTSEINAMEVYINPTAGTITNLNDLKTESLRVGLSTVLLDINASTFDILTNVEMSGNLSLNNGGLFRNDIDPQTLDDVFATAGVITVGTSTAIPPYTVERVGNSTVTPVTIQLNDGSIGQEIFFVYSEAQTGVISISGAVTPLVLPGGTSIELNAQGQTAHLLCVNDGLGNGVWFLVGGTGYSIV
Ga0206677_1000043027	F080618	N/A	MINNWKYLNFFDKNGKYLNFDYDSSTDSWSGTMYLPKVSIGLFEVGQLFILEEFVNKNNNLKQFGFPHGLEVSTGTTGSTNGVCNWIAEWETSDPTEILLFQFNMDFNTGTQSALVQEDDGPDLEILTELDIALDSDPSETVDPLGYTVTDKIRSEALQINLAIRSEVENTFKRTLLIKDDCTDKVIARILVWGETLGEDERLRVMTQNMGYNILESDSSVFRDTNIKELLPNFAEVNIKRKEIMLEGSNIYPWIGSYKALVNAIKFFGYDTLKVREFWKNVDANSPQFGKYIQSNNIDVFDPTVQLNDKKITLPNKKFRKTSLFSLIYRINNIEPDKFDSEDLPITTENYDFTIEEILIKLFGLKKKLENEFLPLNAHIKDITGEADFFGLLEVVNTLSRNDKKEITAGIDASFKLSTDDCIYMEDLRSFTSFCIASEAIVDEAVINFCNAYIAPLSSANAIGRNLIPGPISASTIFPPSPIGPDLNGPFGYPYDGSNVTIAGLSDAFLAYFTRYAPNQNKVGAWPDGESSYYLPDKPGIPVGAMTVLENTSFSNVTWNNIDSTWNQLDDANKFFSFDIDPQGVNPGDIFSITDPISNTGATYTALVGDTDIEVRDALYNQLIALKTSFTDPWLFWDITKETVVTGAVIRLFGQNVDRLVVGCESVVNSQLLFNQLPGETLFTWGAIERGNFDEIEWTVYKDATDISPAYFKVFRGPISQYNKLPIILPYVGTYSVEMKLYDLFNNISSNVKTNFICVDSREVEYSGWYQARKENYTWSSEGKFKWKDYGSLWNLPIEPVMTWDEETPSLYESLDRVNAILNNFGLGASPDFQLLNYQDDGKASFSGPYRWDNLDVGGWNDTYHLWWDMTSTTGDTPAFFQFKEVAPDTYLKIIDENGITAEHYFDSTISTLADAAASLNVSTNRIINKYVYNVVYDATYNQKFIQAVCRYFGVHGDWKYIDIVYANGDRVCPSTGTGSPWPTSDDCPSLIYRKGLSKSSNATWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKAEPRWIIKNTTNSNMADIYFESKYLTYLFKVPGKYEITLELTDTNGNKYKKGRNILVIK
Ga0206677_1000043028	F059988	GGA	MNKFTERRKGMPSVYKATYEEGWELKNEGNDYASNLMKNSFSNYMFRNERLRAFIEDHLGPIMIFWINKVKYLRIYYNFGVPKDYQKIN
Ga0206677_1000043029	F076123	N/A	NVDGVDSVNVFFISEENEKAIREGFYEVPTYGTDPITDQRVLIETKKVEIKEGEDPQLGLDSFGDIVIGPEDLAIIRGGWEDRNGTEFEEIPNKQGISSLNIFFKGTIPNNLYNKTQQAKFNDLKRTRGTTIATSRNSRSTNTGRLQDNPALKAIKGK
Ga0206677_100004306	F071751	N/A	MSNIKKFADFVNENLNEAELPSWVEGGPYDSLKDITGNIDLDGMTVADINKNYQPALKYLGVRSISDMGMVSTTNDDDELYDVIEPQMKGSNLLGNDRGKGMDPSPYTAAYKGMLGDVKVIILQDINGENGYAYAAVDSRGNLK