Scaffold Ga0206677_10000425

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000425
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39636
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (34.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005010	Metagenome	415	Y
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F013231	Metagenome / Metatranscriptome	273	Y
F026712	Metagenome / Metatranscriptome	197	Y
F030556	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000042516	F026712	N/A	MKQTFYPTDEEQDTLMYLVCRESNRRGWTYDNYNIQEDAYRTAISDGAMRTDNYFKN
Ga0206677_100004252	F030556	N/A	MSQDKVFVAKTTVVSTKFGQIVKIALGPQDFEVLQNAKNEKGWVNLEMKDKRDGGKYIQLQGEYTGKAAPQAAAVNDSDDMPF
Ga0206677_1000042522	F010877	N/A	MTTKQLLKSLMGTGLPKGDLKQEMFSFYNSKVGTSKHFVRKENPNTSCGSCIQRVKTSIWKWYHHDESAPNYKGFVFTGRFVAHSMPLYNYDEK
Ga0206677_1000042523	F006322	N/A	MMRNKKGDVVKGRGSELTTLQSEFLERIANEGMENSSSIAKDLNYTSYYRDRRNHGTAFHRELMSLANQEMKSIEAAKGTNLTALIRIRDLALAEGDMKAAMDSIKIINDMQGYKAPTKVEQTKIDITATIDLTAPEEEQDYLDIDAD
Ga0206677_1000042533	F004461	N/A	MAVSISNLPYGDRSRDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDAALTFGTDICAWDPQSTASIGEKEMTVSDYKWSFLNCKTALEGSYRGLLLKKGQHNPETMDAEFKDWVFDYFAKLSAQKALTLAATELATEMTGDADVIDNVIAGGITSANVLDHMEAAYALMSADMLSAVYGDADRDFKPAFFLGTAAMQAYQIAIAEKFTTTPQGIVEGNIPPYFGMEVVHFASLAAGQFILCAPQNLVMLTDDYNDVRAIDMKYEPELSSDKIWGQFKLGFSYLKGDEIVYTHA
Ga0206677_1000042558	F013231	N/A	MILDNRNYKTCKLIKNRVDLYLFEMAKLFANLGSDSTAEEYALAYKRENEMIDKIAELDPDKARSIRPYGS
Ga0206677_1000042565	F005010	N/A	MNRKRKHVREVQKYLEMLMLDTVNLSIHASRFGWTDDIQNQLTNSALLIRKYQRRLRLIK