Scaffold Ga0206677_10000382

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000382
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41187
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F042025	Metagenome / Metatranscriptome	159	Y
F058462	Metagenome / Metatranscriptome	135	Y
F068147	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000038216	F058462	GGA	MTTYDDPINITTKGQYPIRAHMVFNNMGPENCEDILWQNVIDSTSNLEGNEIGVSVTQSYQYTKLNDDPTIMVRWQGIKTTNGNEFRIGLGKGIPADKRTPPIMSGNMKTGVQVNSTLSIQSVKLGCVNGEFAIEKDGKWYAIQIGEAIE
Ga0206677_1000038220	F068147	AGG	MIKGQKDWDYQFVSDCEIVNVFIPKNTHLSEHEELKQKLLLLQQVECDNHLTSSIVNLYNTSSIDWINHVRKMGHKYVAFWFDGCWPKTEGIEKKILTYITRLEKKDWITAVHPKYLDSLMLLNIDEFIAWPAKAPNFGNYKFWAENWISDCTVELSKTIERNIVVGAPQTDPENFLNGLMNEKYTDHTISRGARVIIKRKNIPSSPVYFVNTEPLDVDIIEQNKGKIYQQYVGTTAGFKLLYNAYNYGFDLHSTKFVWYDFDAHSLKFKRLMVENWDGIDYPAFVEQFCSKYPEANSLLLKDAKKQWASILEHFGGENNWLDFWCQVGCMEHEFIEVDLISGHKQITDKLDNVSTFFWTSNIYSYVLLKVMSEPFKLERSFADLVTRLQEIDNCWFFGTDPNDNNLNCNVKSILGYSTNESIGT
Ga0206677_1000038248	F042025	N/A	MKEFIQQMPVQLLTQWKNPTPSPNDDLALMEDISKNGITDPIVLGVGVYSRKVRLDTGNHRIYLLPRMGMTHLPVVCRVWNYCTFNNGNGDHSFDCPEISVKQEWINEEYYARPSDVIDIMALMLKI
Ga0206677_100003828	F009293	GGAG	MTRIAKDIIAGDDFVVNVFDAKKQDLTDNYKIYEAFESGWPVVIKNLTIPQLDYEYYDNLADWTIPDNKWIMPWYNSHIKNRSRLELERGWTDKEIDLFHKKHKQSNNGWNEIFDMLFPHYKTNERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKRPRVLSFGPDLEKLYYDYKDEFNLGELDKNNIHTFISEMRNRCVWNEQQWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADIKNESLVFPKMCMSNRIKNL