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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021085 Open in IMG/M |
| Scaffold ID | Ga0206677_10000365 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42444 |
| Total Scaffold Genes | 64 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (81.25%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009293 | Metagenome / Metatranscriptome | 320 | Y |
| F049949 | Metagenome / Metatranscriptome | 146 | N |
| F090893 | Metagenome / Metatranscriptome | 108 | N |
| F099879 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206677_1000036535 | F099879 | AGGA | MANREDKVEVPETIVVHCTDNDQDVEVTYVSQHNGIIRTDLQGMPLYFKHHRANIYVGNMLGREFVMKL |
| Ga0206677_1000036547 | F049949 | N/A | VVDITTLLSYNNTIMGMVKKVKESENKIKLVNNGGSLSETDLQLIAGTELVINMMRNRLCVVTNNNDIAWQDLMIDVQGLYHIRPLDKSKRVYQLWFESKQDIEQFNKNLYVSKLSNTAHEPA |
| Ga0206677_1000036550 | F090893 | GGA | MPIERKDRSFDLIFDQVSMDHVPAEYIKEVRVDLGTGERITLTKEDLQMIKNKSADEIIKALTVDSMSNISLKLDYTAIKSDVMRGVSGFLGKHFDDK |
| Ga0206677_1000036555 | F009293 | GGAG | MTRIAKDIIAGNDFIVNVFDANKHDLKDNFKLYEAFESGWPVVIKNLTIPQLDYDYYDDLPDWTIKDNKWIMPWYNSHIKNRSRMHIERGWNDEQINVFHQKHKQANNGWNEVFDMLFPHYKTSERMLSHRYNTLVENKLHLDELDEQHTGLEQQIRMFVQLDKKRPRVLSFGPDLQQMYNMYKDKFNLGELDKNNIHTFITGMRDRCVWNEEKWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADILNESLLKPELCMAERIKKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |