Scaffold Ga0206677

Basic Information
Taxon OID	3300021085 Open in IMG/M
Scaffold ID	Ga0206677_10000167 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021085 Open in IMG/M

Scaffold ID

Ga0206677_10000167 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	59468
Total Scaffold Genes	109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	83 (76.15%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

59468

Total Scaffold Genes

109 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

83 (76.15%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002688	Metagenome / Metatranscriptome	536	Y
F031665	Metagenome / Metatranscriptome	182	Y
F042029	Metagenome / Metatranscriptome	159	Y
F046650	Metagenome / Metatranscriptome	151	Y
F065138	Metagenome / Metatranscriptome	128	N
F068146	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000016713	F046650	AGG	MGVSRPNEVLTGSTDFYTVYTLIDITDSGVVSPKVDAKGYYQAQNLNTFIQSISLRSQPVLSSVEFLDAQNLDDYDFGSNFSGVQDVWVLKFASETADAWKYEENSIHMLVQDFDKMPVHTILDETANINPEIVDTSTASKNTYFNYRQNI
Ga0206677_1000016720	F065138	AGAAG	MRYADLFEISQVDAKVIDLLSILSSEGVESIPLDSLVKELVAMGIDADGESLFDEIQNLPIVNNIKDGIVYFNTASMGASNMNKVDPEKNKKQVKAMAKKQVDKELNK
Ga0206677_1000016748	F042029	GAGG	MNTLYLVCSHSCISQMEVPYLLNNSPMLHGESQAGEHWASYELDGKEIDHEPGELGKIRVHDDYWNISDVDNQWYNYNVRNTMNISNDQLDGLLNLIETKSIAVLLHAQNYKDIWKWSRGIPVIMIRTRIDEWDGNIVSWAAREYNYLMEDERNANYSKDDHAWQSTETIVSNFNAKKQFNNEINDDEGDITLNQSQWSTLDGLNTLWDTVGIDSPDQNWIHQYYEDFQNHQEINKELAKEITDAYNKG
Ga0206677_1000016766	F068146	N/A	MTIDNDSYTVTAPDLMLTEHGIGICISSTNEILITDIKELFEKYIATSVVFFVQNKKTTSATLPWVWNVSNTCDFMIVDVDTCAWEDIMAALLKSQKTENTVLFYSDKYKRRETVKLINATGTNLVVRSIDDINNFVRLQMNPEYFDEK
Ga0206677_1000016781	F031665	N/A	MLESEVLHFQQFISPILGLVFTGIVALWIKDLVGDLVASIRWKMKPGFEPGDVVYLDGERATIISIGYRETIFEVDNGRGKVWRYIYNTRIPTHRLEKLIHEK
Ga0206677_1000016795	F002688	GGAGG	VEKVESMSNPNEAGNNKGAILAFFIIAFMMIGTPIIIGTTMGWFNLFGILGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206677_10000167

Overview

Ecosystem & Geography

Associated Families

Sequences