Scaffold Ga0206677_10000160

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000160
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59892
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006240	Metagenome / Metatranscriptome	378	Y
F010650	Metagenome / Metatranscriptome	301	Y
F060337	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000016011	F005010	GAG	MVRNYLRKKRHIRETQKFLDMLVIDNTNLSIQASRFGWTNEIQKSITNNAMLIRKYQRRLRLIMM
Ga0206677_1000016013	F006240	N/A	MAYLDNKEHKHIIDCVLHQNAQLFQNLGKDSSRSEYEKAKIAERQKLRRIRDIDPEKIDRLIKDSLDD
Ga0206677_1000016016	F060337	N/A	MKIDYNEVTLILPKPPSLNKWYSGKHWSIRKKQKESYSASIKDQLERIDKFTMDRFKVDVEYNCRYDVDNAITCVKFLADYLRGDGYVVDDTPKYFFSQSTTFNQDLNKDEFKATIRCYGYSTRE
Ga0206677_100001606	F010650	N/A	MSKMKQFLRIANARLRKVYPNKTQRKAWAANMWRRYVERQNIERDL