Scaffold Ga0206677_10000147

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000147
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61285
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (12.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018724	Metagenome / Metatranscriptome	233	Y
F046313	Metagenome / Metatranscriptome	151	N
F061766	Metagenome / Metatranscriptome	131	Y
F067632	Metagenome / Metatranscriptome	125	Y
F075871	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_1000014720	F061766	N/A	MAKIDLDGDGKADVSISIPQIITIAAMFASIVGSYYTLNARVEAVEVQAKKLKENEQKYTWPSQRKTEEEVKTLEAEMRAFMKDIEYLRRDIDRKKSK
Ga0206677_1000014750	F067632	N/A	MNTQLQNYLDLQNKIARIEKLTNASWDTKYMLEKFVPTVWNDGFDVQDIIDYITVKLHEVITKLENEKQIETTNTK
Ga0206677_1000014754	F075871	N/A	MNKLVQQIADECIDIIDEQIDNTIHWELDVNDLEGDDLSKLELKIKQQILFTLIKKVTK
Ga0206677_1000014758	F046313	AGG	MKTKDKLYDLRQAIDDLVAIGPDYAHFMNAQIAHKNLKKIKKLLEYVG
Ga0206677_1000014760	F018724	N/A	MLQQLHEIHGKLDMLQDLKIQGLGLSLDQQQQLLIIHQQLLDQKFQLERQIKKEYIL