NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000026

Scaffold Ga0206677_10000026


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000026 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120283
Total Scaffold Genes165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)131 (79.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016155Metagenome / Metatranscriptome249Y
F036246Metagenome / Metatranscriptome170Y
F038901Metagenome / Metatranscriptome165Y
F051157Metagenome / Metatranscriptome144Y
F074737Metagenome / Metatranscriptome119N
F093963Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_10000026129F038901AGGAGMERYLITTESYIYAENEAKAKSLAGYVQGKQRKQYDNQCHVTKLEYAPFGGGFSDTNLIEGEIL
Ga0206677_1000002648F093963AGAAGMDTKKEKMGDIGEKLVFEYYNGTQSTYKYDSEKDGMIGEETAEVKTQNRHPFGYFTVNTAWKNQAKKCKSVDRLFFVEYDSSPDAVLWECTDREDTKIITTKNGRVMEGWPISKMKLITTFKGKGDELRKHTSSKIF
Ga0206677_1000002664F051157AGGAGGMKLSMRHIATDIPVDVELDLVEQSWAKDKNPTTLNLSWDKLCDSVARRTGHDIQGNFEIETIDGRVFH
Ga0206677_1000002686F036246N/AMKNFIISTWEKIQWFLRLFQKRYTIYVSFDSQWGNEDDQVYMHVRKVIKANFKELKFRTDDKRVIHIRGMQGLRYKIEDE
Ga0206677_1000002694F016155GGAMILECEHCYSRIVIKPDEPIKINFCPHCGEATEDSDELDFNE
Ga0206677_1000002696F074737N/AMAKILKFPTPQELQQKQDEKTLDQASETCVDSAHFLFEVLEEFINAGEVSEDFMDMDFRDETNQESRDMYVIVNMINGMLNRYYGIPHGLHQTMDSAYVKIKEMILINEQANHELAEYTFEPDNSDIEIEFTPEDPDDID
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