Scaffold Ga0206677_10000013

Overview

Basic Information

• Taxon OID: 3300021085
• Scaffold ID: Ga0206677_10000013
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151539
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 199 (81.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019653	Metagenome / Metatranscriptome	228	Y
F027320	Metagenome	195	Y
F055647	Metagenome / Metatranscriptome	138	Y
F056914	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206677_10000013104	F027320	GAGG	MIFSTSLVKTQGHWAVGTEWQYAKGIVKMHDEGFSCSCKKKPRKACSHIRNVKLRLHGTFDEYYKEAA
Ga0206677_10000013147	F019653	GGA	MTALVSNYVFSPLSGLWSSIDRWSQVVGYSRAAAELARMGMHEESKRCMMEIKDLYDNQ
Ga0206677_100000133	F055647	AGG	MHIVRRKDGEIIAIASRLEDAIAIADGSEVDKEDYVVQESTDQQELAEVYRSYYGTRSL
Ga0206677_1000001337	F056914	AGGA	MKLFTQIIADQIPQGLDRYDQIFAAKRLILASESPILATCRETLEEIEEIIFQRDINY