Scaffold Ga0206678_10016243

Overview

Basic Information

• Taxon OID: 3300021084
• Scaffold ID: Ga0206678_10016243
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4281
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F001930	Metagenome	615	Y
F035798	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206678_100162433	F001930	AGGA	MKSFQQHLKEEVAWQQSTSKMIFDFSQIGQMKIPLSSKMLSWIFNVQLPRVTVFHVTSGIGFEKLMRLQNKKASISAFFNMTADYIDQGIKTEGGVVAELDANILMSSKNDILSMPDKAGRRWVELHNIDTNEKMEPEFEKMLIDLAIKHDPRNKEYLKTVPEIGVGVWYKLQTDLLTKFDPAKAGKKLASVIADYIDGVGTILKKHKNDIQGKVHGYIVRRGTLAVKHPSGRMVGGDSEISEWNAWDEQVVNEIKIEKVHTFNTAKREADWVKTDIIPRLGRIPHKHWKSAAELSTYITQVADAEVRTFGGWARKQ
Ga0206678_100162435	F000659	AGG	VRSFIQYLEEANSKYIVSKNPNDKKWYVMGHVGNNKWMPVSNGFKNKTQAQKWAKSQDKVDIAARGEI
Ga0206678_100162437	F035798	AGG	MKRFKETNKELYEISRKDKLALDMALISESGDMCGIPLEKLRSKVMRDRHKKMCGIPTKGNPKSMWSKAAQKAAGGRHKLYNSLEEDDSNLIVLIQDITRQMIQALQKGDERKLKGLYKNLGKVIK