Scaffold Ga0206678_10009520

Overview

Basic Information

• Taxon OID: 3300021084
• Scaffold ID: Ga0206678_10009520
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5763
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008625	Metagenome / Metatranscriptome	330	Y
F020372	Metagenome / Metatranscriptome	224	Y
F050431	Metagenome	145	Y
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206678_100095201	F050431	N/A	FLLYCTGWLGGDILISAIWIGAAYGFIDLMKQGKI
Ga0206678_100095205	F008625	N/A	MHILMTKEEIAGNRLVWRHIQKENQKMMLDPLGYDPIIDIDEIHSRNRRKTDDPYIKATMKNADHKRWKENTAERR
Ga0206678_100095206	F020372	N/A	MNTEQETNKATIRIYIDGKEMLYSHQNIVAAINNFLPYLTNDDLDEMKKTCHKLKDHRKQKEYLAHLETLKHSWPYPDTIKQ
Ga0206678_100095207	F058211	N/A	MIPIENNSWDYVQGLIEKEINSAFKLRIKEDNDKMKFEKEHPYMKRLDEALKQYSVVKVANANGAHHGYDFEEMKQVILDALFTSYLGETIRK