Scaffold Ga0210380_10000702

Overview

Basic Information

• Taxon OID: 3300021082
• Scaffold ID: Ga0210380_10000702
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14297
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9208
  • Long. (^o): -106.9484

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047523	Metagenome / Metatranscriptome	149	N
F048509	Metagenome / Metatranscriptome	148	N
F097678	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210380_100007024	F048509	GGAGG	MTNGIAQVVIGIALAAAIGGVAALNPGNKPHEEVAYLERLAATVERAKVLAPDTRAQLSKLTNRYETLLSDAQLDLKRQKALRRIRTVMLRSAD
Ga0210380_100007025	F097678	AGGAG	MKPNPKWTAATLVVLAAATVSTMHALAIAPVPMVHESDGASASGSKTYDEWQAPLRRSLRARFLDHRTAEDAIDGGAAGRGFTLRIFDGLEKMQIWDNAP
Ga0210380_100007026	F047523	GAGG	MSGFITGLKSVEEVEAGIFEVVVTLQRGATAKLRMNTFTFQAFVTKFIEGPRPERWLDKPICLLKKIFAPLWHSRKRQ