Scaffold Ga0210382_10029644

Overview

Basic Information

• Taxon OID: 3300021080
• Scaffold ID: Ga0210382_10029644
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2048
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013283	Metagenome	272	Y
F071063	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210382_100296441	F071063	N/A	MTFRAPRLAGGCATPVAFEISYPEGTVSRLKLALALSLIPLCLAAQESPFHGGQWAMQFGGNSNLFSLGVLHFSSARSAWILDLSNSVTVLNATNTDKFGGPTTSADQQFISLDARLGKRHYHTGNAKVVSFQTLALEGGWSDQMVDVPAGNVRQTTWNAGINAELGGGYMLTSGVSVGGTAMLSAGYLSFKRDDPANRETGHGYYSGIRVMIALGLYF
Ga0210382_100296442	F013283	GAGG	MKCLPTVFAALVLLPVTVFGQDSTPFHKGQWAAQFQAGAAFGSLGFIKFRSPTHALVLDLRISGSHREELGKDSTGASQLDVLLSVASVQARFGWRRYAGDGNRTKVVSHYSFGMLAGFGHSVYALRQTGHSQSNGWTVGAFGDLGGTYLLTPKFGVGALATAELTYGNSVLKASSGGGSRDWSIGGSAVNAALVATLYF